pseudobulk RUV: Datasets and GSEA results

This repository encompases the following datasets: Raw data downloaded from the Chan Zuckerberg CELL by GENE Discover (CZ CELLxGENE Discover) platform: 230126_lupusdataSCE_raw.zip Processed data from the control subset, both single cell and pseudobulk files: controlsubset.zip Processed data from the case study subset, both single cell and pseudobulk files: CSsubset.zip Pseudobulk pseudosamples generated from the samples in the case study subset: pbps10rep_studycasemix.zip Cytosolic ribosome genes used as negative control genes: Genes_Gagnon.txt Set of negative control genes from the scMerge package: ncgSCmerge.txt Genes from the ISG signature: ISGsignature.txt Gene set enrichment analysis results (from the case study): GSEAresultsCS.zip