HomosapienDEE2CellScore data package
收藏DataCite Commons2022-08-11 更新2025-04-17 收录
下载链接：
https://auckland.figshare.com/articles/dataset/HomosapienDEE2CellScore_data_package/20469522/1
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资源简介：
Dataset downloaded from dee2.io for hsapiens, and processed for use with the new version of CellScore that uses SummarizedExperiment to contain the data. Data was generated by running (in R 4.2.0): <br> BiocManager::install() BiocManager::install("getDEE2") library(Biobase) library(SummarizedExperiment) library(getDEE2) library(devtools) devtools::install_github(repo="flaviusb/CellScore") library(CellScore) library(DESeq2) devtools::install_github(repo="flaviusb/homosapienDEE2CellScore", force=TRUE) library(homosapienDEE2CellScore) BiocManager::install("AnnotationHub") BiocManager::install("ExperimentHub") library(AnnotationHub) library(AnnotationHubData) library(ExperimentHub) library(ExperimentHubData) homosapienDEE2CellScoreData <- buildData(build_tsne=FALSE, build_raw=TRUE, build_srx_agg=TRUE) writeOutSEZip(homosapienDEE2CellScoreData$qc_pass_raw, filename_base="hsDEE2cs_qc_pass_raw") writeOutSEZip(homosapienDEE2CellScoreData$qc_warn_raw, filename_base="hsDEE2cs_qc_warn_raw") writeOutSEZip(homosapienDEE2CellScoreData$qc_pass_agg, filename_base="hsDEE2cs_qc_pass_agg") writeOutSEZip(homosapienDEE2CellScoreData$qc_warn_agg, filename_base="hsDEE2cs_qc_warn_agg") writeOutSEZip(homosapienDEE2CellScoreData$qc_pass_deseq2, filename_base="hsDEE2cs_qc_pass_deseq2") writeOutSEZip(homosapienDEE2CellScoreData$qc_warn_deseq2, filename_base="hsDEE2cs_qc_warn_deseq2") writeOutSEZip(homosapienDEE2CellScoreData$qc_pass_rank, filename_base="hsDEE2cs_qc_pass_rank") writeOutSEZip(homosapienDEE2CellScoreData$qc_warn_rank, filename_base="hsDEE2cs_qc_warn_rank") <br>
提供机构：
The University of Auckland
创建时间：
2022-08-11
