R scripts for "From randomness to traplining: A framework for the study of routine movement behavior"

Here are provided all R functions necessary to run the methods presented in Riotte-Lambert, L., Benhamou, S. and S. Chamaillé-Jammes. 2017. From randomness to traplining: A framework for the study of routine movement behavior. Behavioral Ecology. 28:280-287

Open "script.R" to run the methods on one example.

All details on the inputs and outputs of the R functions are given as comments in the R scripts.

Abstract
Memory allows many
animals to benefit from the spatial predictability of their environment by
revisiting known profitable places. Travel route optimization or
resource-acquisition constraints usually lead to repeated sequences of visits,
which may have major evolutionary and ecological implications. However, the
study of this behavior has been impaired by a lack of concepts and
methodologies. We here formally define routine movement behavior, provide an
index that quantifies the degree of repetitiveness in movement sequences in
terms of minimal conditional entropy, and design
a flexible procedure that detects the specific sub-sequences that are repeated.
We demonstrate our framework using computer simulations and real-world movement
data of black-tailed deer (Odocoileus
hemionus) introduced into a novel
environment. The simulation example showed that our methods can suitably reveal
the increase in the level of routine movement behavior during home range
establishment. Black-tailed deer did not show such an increase, suggesting that
home range establishment occurred very fast. In both examples, our procedure
determining the sub-sequences that are repeated provides a precise
visualization of routine movements. Our
approach solves limitations in the study of routine movement behavior and thus
opens promising perspectives for the study of the linkages between cognition,
foraging strategies and environments. Although we developed it to study routine
movement behavior, it can be applied to any type of behavioral sequence and
should thus be of interest to a broad range of behavioral ecologists.