Additional file 2 of Differential LTR-retrotransposon dynamics across polyploidization, speciation, domestication, and improvement of cotton (Gossypium)

Additional file 2: Table S1. Genome assembly information table. Table S2. N of intact elements found per lineage, genome and subgenome. Table S3. N of TIPs classified by type and lineage in the G. hirsutum pangenome. Table S4. N of TIPs classified by type and lineage in the G. barbadense pangenome. Table S5. WGS and RNA-seq datasets used for eQTL analysis. Table S6. TIP-eQTL analysis results summary. Table S7. Dataset codes and accession names for G. hirsutum (a) and G. barbadense (b) pangenome genotyping. Table S8. TIPs shared across population groups in G. hirsutum and G. barbadense. Table S9. Summary of TIPs with high PBS in the G. hirsutum (a) and G. barbadense (b) pangenomes.