Genome structure mapping with high-resolution 3D genomics and deep learning (experimental data)
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https://zenodo.org/doi/10.5281/zenodo.18623177
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Experimental data files generated for Cleopatra manuscript. Data is available for extremely deep Micro-C (GM12878, HCT116, K562) and Region Capture Micro-C, or RCMC (GM12878, HCT116, K562, H1). Regions used in RCMC can be found in RCMC_regions_overview.txt. Regions 1-14 can be found in the {celltype}_RCMC_merged.50.mcool files, while the validation regions can be found in {celltype}_revision_regions.50.mcool. For RCMC, .mcool files with multiple bin sizes are available. For Micro-C, the .cool files are provided at 50/100bp bin size as indicated and can be convered to .mcool files using cooler zoomify.
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2026-06-25



