MOESM2 of A meta-analysis of two high-risk prospective cohort studies reveals autism-specific transcriptional changes to chromatin, autoimmune, and environmental response genes in umbilical cord blood

Additional file 2: Table S1. Differential expression analysis of ASD compared to TD subjects for individual studies and meta-analysis. Table S2. Gene overlap analysis of ASD- and Non-TD-associated differentially-expressed genes with genes previously associated with ASD. Table S3. Gene overlap analysis of ASD- and Non-TD-associated differentially-expressed genes with blood cell-type specific genes. Table S4. Significant terms from overrepresentation enrichment analysis of ASD-associated differentially-expressed genes. Table S5. Significant terms from GSEA of probes ranked by ASD versus TD differential expression. Table S6. Differential expression analysis of Non-TD compared to TD subjects for individual studies and meta-analysis. Table S7. Significant terms from overrepresentation enrichment analysis of Non-TD-associated differentially-expressed genes. Table S8. Significant Terms from GSEA of probes ranked by Non-TD versus TD differential expression. Table S9. Consensus coexpression module membership in MARBLES subjects. Table S10. Consensus coexpression module membership in EARLI subjects. Table S11. Correlation meta-analysis of consensus module eigengenes with demographic factors. Table S12. Cell type proportions in MARBLES and EARLI subjects estimated with CIBERSORT. Table S13. Correlation meta-analysis of cell type proportions with demographic factors. Table S14. Correlation meta-analysis of consensus module eigengenes with cell type proportions.