List of hits from Phyre<sup>2</sup> analyses using Human IP6K3.
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List of hits from Phyre2 analyses using Human IP6K3.
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创建时间：
2025-09-11
相关数据集
atomic coordinates for Rab escort protein 1 homology model
protein atomic structure predicted using homology modeling
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atomic coordinates for retinol dehydrogenase 12 homology model
protein atomic structure predicted using homology modeling, PDB text format
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Template_7QER_Homotypic_Cx31_1.pdb
Human homotypic Cx31.1 homology model based on the human Cx26 cryoEM structure (7QER).
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Data for: Cloning, expression, characterization and homology modeling of a novel water-forming NADH oxidase from Streptococcus mutans ATCC 25175
The figures.
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Identified homologous structures for the M1 protein domains.
The list of homologous proteins identified by HHpred for each domain of the M1 protein that are used in the comparative modeling of the full-length M1. (XLSX)
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atomic coordinates for interphotoreceptor retinoid binding protein domain 1 homology model
protein atomic structure predicted using homology modeling
DataCite Commons2024-12-16 更新50
Mumps M protein PDB files
Conservation and entropy PDB files for the M protein homology model
Figshare2017-05-01 更新00
atomic coordinates for interphotoreceptor retinoid binding protein domain 2 homology model
protein atomic structure predicted using homology modeling
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Zika virus homology model of glycoprotein_M
Zika virus homology model of glycoprotein_M from Illustrating and Homology Modeling the Proteins of the Zika Virus
DataCite Commons2020-09-04 更新50
Zika virus homology model of Capsid
Homology model of capsid protein. From work described in Illustrating and Homology Modeling the Proteins of the Zika Virus
Figshare2016-02-25 更新00
Homology Models
This data record consists of a compressed folder containing 34,613 individual PDB files, each representing a distinct homology model. Among them, 18,518 models include small molecules as ligands, and 2,829 models contain nucleic-acid molecules. Within the models, 27,932 are monomers, 4,989 were predicted as homodimers and 1,692 were predicted to be of higher oligomeric states.
DataCite Commons2024-06-05 更新100
Zika virus homology model of peptidase_S7
Zika virus homology model of peptidase_S7 from Illustrating and Homology Modeling the Proteins of the Zika Virus
Figshare2016-02-25 更新50
Proteins used as templates for homology modeling of A. rabiei OYEs.
Proteins used as templates for homology modeling of A. rabiei OYEs.
NIAID Data Ecosystem50
Zika Virus homology model of NS1
Zika virus homology model of NS1 from Illustrating and Homology Modeling the Proteins of the Zika Virus
Figshare2016-02-25 更新50
Homology Models
This data record consists of a compressed folder containing 34,613 individual PDB files, each representing a distinct homology model. Among them, 18,518 models include small molecules as ligands, and 2,829 models contain nucleic-acid molecules. Within the models, 27,932 are monomers, 4,989 were predicted as homodimers and 1,692 were predicted to be of higher oligomeric states.
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atomic coordinates for tissue inhibitor metalloprotease 3 homology model
protein atomic structure predicted using homology modeling
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Statistics for the predictions using homology models.
ac.f. Figure 4. bcalculated from the sequence alignment for homology modeling. Statistics for the predictions using homology models.
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Zika virus homology model of NS5
Zika virus homology model of NS5 from Illustrating and Homology Modeling the Proteins of the Zika Virus
Figshare2016-02-25 更新20
2014_Myklebust_etal_HumMolecGenet
# Simulations of 10p/15p # yeast : simulations based on xtal structures from Marmorstein team # human : simulations from Angele's homology models
DataCite Commons2025-11-11 更新30
Homology Modeling and Docking Evaluation of Aminergic G Protein-Coupled Receptors
We report the development of homology models of dopamine (D2, D3, and D4), serotonin (5-HT1B, 5-HT2A, 5-HT2B, and 5-HT2C), histamine (H1), and muscarinic (M1) receptors, based on the high-resolution structure of the β2-adrenergic receptor. The homology models were built and refined using Prime. We have addressed the required modeling of extracellular loop 2, which is often implicated in ligand binding. The orthosteric sites of the models were optimized using induced fit docking, to allow for side-chain flexibility, and the resulting receptor models have been evaluated using protein validation tools. Of the nine homology models developed, six models showed moderate to good enrichment in virtual screening experiments (5-HT2A, 5-HT1B, D2, 5-HT2C, D3, and M1). The 5-HT2A receptor displayed the highest enrichment in virtual screening experiments with enrichment factors of 6.1, 6.9, and 5.9 at 2, 5, and 10%, respectively, of the screened database. However, three of the models require further refinement (5-HT2B, D4, and H1), due to difficulties in modeling some of the binding site residues as well as the extracellular loop 2. Our effort also aims to supplement the limited number of tested G protein-coupled receptor homology models based on the β2 crystal structure that are freely available to the research community.
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