Single cell whole genome sequencing from Funnell, O'Flanagan, Williams et al

This repository provides the processed data necessary to reproduce the results from: "Single cell genomic variation induced by mutational processes in cancer Funnell, O’Flanagan, Williams et al"

This includes the following:

Single cell whole genome sequencing

Allele specific copy number profiles

SNV counts per cell

Structural variant counts per cell

QC metrics

clone assignments

phylogenetic trees computed with sitka

benchmarking results vs other methods

bulk whole genome sequencing

copy number profiles

SNVs

10X single cell RNA sequencing

count matrices

seurat Rdata objects

analysis tables

downstream processed results used to generate figures

oxford nanopore

phasing results

For further information please feel free to get in touch with Marc Williams (william1 [at] mskcc.org)