Impacts of speciation and extinction measured by an evolutionary decay clock

In use of provided custom data please cite the associated paper (Hoyal Cuthill et al 2020, Impacts of speciation and extinction measured by an evolutionary decay clock. Nature, DOI: 10.1038/s41586-020-3003-4). ReadMe For Dryad dataset https://doi.org/10.5061/dryad.b8gtht79t Hoyal Cuthill et al Nature DOI 10.1038/s41586-020-3003-4 Files and usage notes: fossil_embeddings.txt Spatial embedding of fossil species produced in the associated publication (Hoyal Cuthill et al, Nature). This file can be opened with a text editor or read in by the Supplementary Computer code of the associated publication (Hoyal Cuthill et al, Nature). Rows correspond to fossil species, columns correspond to axes of the multidimensional spatial embedding, values give locations of species on these axes. fossil_time_embeddings.th This file is a PyTorch state dictionary object, recording machine learning parameter values from the analysis of the associated publication (Hoyal Cuthill et al, Nature). This file can be opened with a CUDA enabled PyTorch instance. For example see instructions for handling PyTorch state dictionary files at: https://pytorch.org/tutorials/beginner/saving_loading_models.html OccNs_pbdb_data_1lineheader.csv This is a comma separated values file containing the occurrence numbers of the Paleobiology Database download of the complete dataset used in the associated publication (Hoyal Cuthill et al, Nature). Corresponding full raw data can be downloaded from https://paleobiodb.org/ using the following data download url: http://paleobiodb.org/data1.2/occs/list.csv?datainfo&rowcount&taxon_reso=genus&max_ma=1000&min_ma=0&show=class,coords,env OccNs_pbdb_data19_03_20_species_lineheader.csv This is a comma separated values file containing the occurrence numbers of the Paleobiology Database download of the taxonomically screened dataset used in the associated publication (Hoyal Cuthill et al, Nature). Corresponding full raw data can be downloaded from https://paleobiodb.org/ using the following data download url: http://paleobiodb.org/data1.2/occs/list.csv?datainfo&rowcount&taxon_reso=species&max_ma=1000&min_ma=0&show=class,acconly,coords,paleoloc,env,acconly stimes.txt This is a text file containing time range mid points for analysed fossil species as described further in the Supplementary Computer code of the associated publication (Hoyal Cuthill et al, Nature).