Additional file 1: of Repertoire-wide gene structure analyses: a case study comparing automatically predicted and manually annotated gene models

Table ST1. Data sources and used files: list of publications, download sources, and used files of all seven species; Table ST2. Auto vs. manual: counts of gene models that were subjected to manual annotation including non-coding models, as well as of OGS, MAN-ADD, MAN-SUB, AUTO, and AUTO-SUB; Table ST3. Tests: results of Bonferroni-corrected two-sample Kolmogorov-Smirnov tests and two-sample Wilcoxon tests of all combinations of the five (sub)sets given for each species and each gene structural property; Table ST4. Correlation coefficients: lists for each species and each set (AUTO, OGS, AUTO-SUB, MAN-SUB, MAN-ADD, and resampled samples 1–1000) the Spearman’s rank correlation coefficient of each of the four comparisons; Table ST5. Cuticle proteins — all v1.1: list of cuticle protein genes manually added or manually annotated in Oncopeltus fasciatus; Table ST6. Chemoreceptors — all v1.1: list of chemoreceptor genes manually added or manually annotated in Oncopeltus fasciatus; Table ST7. CP and CR KS-tests: results of (Bonferroni-corrected) two-sample Kolmogorov-Smirnov tests comparing cuticle protein (CP) and chemoreceptor (CR) gene model structure properties to OGS, MAN-ADD and each other. (XLSX 933 kb)