Supplementary files

<b>Table S1. </b>List of analyzed isoforms along with their annotation expression and usage.<b>Table S2</b> List of isoform switches with predicted consequences.<b>Table S3</b>Overview of literature derived isoform switches as well as the extensions we make.<b>Table S4</b>Pan-cancer Isoform Switches with Predicted Consequences<b>Table S5</b> Pan-cancer predictors of patient survival.<b>File S1</b> Containing two SwitchAnalyzeRlists one with all genes containing an isoform switch in the TCGA data (‘tcgaSwitchAnalyzeRlistSignificant’) and one with information about all tested isoforms (‘tcgaSwitchAnalyzeRlistAll’). Both list are meant to work with IsoformSwitchAnalyzeR. Note that the biological sequences have been removed to conserve space but can easily be added with the extractSequence() function.