Additional file 4 of Identification of eQTLs using different sets of single nucleotide polymorphisms associated with carcass and body composition traits in pigs

Additional file 4. “Variant Effect Prediction for cis- and trans-eQTLs identified in the skeletal muscle of pigs with threshold of 1% from the FDR”. Description: This file provides Variant Effect Prediction (VEP) information for all cis- and trans-eQTL (FDR < 0.01) identified in the scenarios S2, S3, S4, S6, S7, and S8. It includes detailed annotations and predictions on the functional consequences of genetic variants associated with gene expression regulation in the scenarios (FDR < 0.01).