Additional file 8 of nanotatoR: a tool for enhanced annotation of genomic structural variants

Additional file 8: Supplementary Table S7. nanotatoR annotation of structural variants in the dual-labeled sample NA12878 dataset (SVmerge output). Content of the various tabs is detailed in the first tab (“LegendS7”) of the Excel book. SVs reported in the indel, inv., and trans tabs have undergone the default nanotatoR filtration (found in self molecules, passed chimeric score threshold). Columns in each sheet of the workbook are either a direct output of SVcaller or appended by nanotatoR, as indicated in column 3 of the table. In the all_PG_OV tab, the cells containing the query genes are highlighted in purple. Details about SVcaller columns are available at https://bionanogenomics.com/wp-content/uploads/2017/03/30041-SMAP-File-Format-Specification-Sheet.pdf