<p>Analysis 1 gene ontology analysis of differentially expression genes in the developing gonads for three knockout lines (dmrt1L females, dmrt1L males, dmrt1S females, dmrt1S males) compared to same-sex wildtype siblings, and for wildtype males compared to wildtype females (MF1, MF2, MF3).</p>

Results are listed for three gene ontology categories (biological process, molecular function, cellular component); subcategories with significant enrichment follow their parent category and are indicated with “>”s, which reflect the degree of nestedness. For each gene and analyis, the number of differentially expressed genes is indicated (# DE) and NS indicates no significant enrichment. Analyses were performed for one quantification method (STAR) and one method for analysis of differential expression (edgeR) and the false detection rate P-value is indicated for each significantly enriched annotation (FDR). Because a putative human ortholog was not identified for some transcripts (Table S1), the number of genes used in the gene ontology analysis was generally lower than the number of differentially expressed genes. (XLSX)