Genome annotation pipeline and library of sequences for 13 bone and eggshell proteins for Anatidae (ducks, geese and swans)

Supplementary Data for Codlin et al. Novel avian protein sequences improve resolution of palaeoproteomic approaches to taxonomic identification and reveal widespread intra-species variability. These files include final curated sequences for 13 proteins from annotation of 160 Anatidae genomes, reference proteins used in annotation pipeline, outputs of mapping SRAs for Anas platyrhynchos to a OC116 gene and Anser indicus to a COL1a2 gene, code to reproduce figures, as well as other files mentioned in the manuscript. See "List of supplementary files" for details of the files in this repository. Note "demo.zip" includes a copy of GCA_015476345.1 Anas platyrhynchos genome assembly ZJU1.0 - NCBI - NLM downloaded from NCBI 21/05/2025.