Leptinotarsa decemlineata genome annotations v0.5.3
收藏agdatacommons.nal.usda.gov2024-02-08 更新2025-03-22 收录
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https://agdatacommons.nal.usda.gov/articles/dataset/Leptinotarsa_decemlineata_genome_annotations_v0_5_3/24680946/1
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资源简介:
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents the Leptinotarsa decemlineata gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Leptinotarsa decemlineata genome assembly 1.0. Further annotation method details will be available in a forthcoming publication.
NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.
If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use
Resources in this dataset:Resource Title: Leptinotarsa decemlineata genome annotations v0.5.3 for genome assembly v1.0. File Name: Ldec_genome_annotations_BCM_version_0.5.3.tar.gzResource Description: The attached tar.gz archive (Ldec_genome_annotations_BCM_version_0.5.3.tar.gz) contains the following files:
LDEC.Analysis.gff3.gz. This file contains evidence gff3 format underlying the final gene predictions.
LDEC.CDS.fna.gz. CDS sequences of Leptinotarsa decemlineata genome annotations v0.5.3.
LDEC.faa.gz Amino acid sequences of Leptinotarsa decemlineata genome annotations v0.5.3.
LDEC.fna.gz cDNA sequences of Leptinotarsa decemlineata genome annotations v0.5.3.
LDEC.Models.gff3.gz Gff3 of all gene predictions of Leptinotarsa decemlineata genome annotations v0.5.3, modified by the National Agricultural Library to be compliant with gff3 specifications.
近日,德氏小瓜叶甲(Leptinotarsa decemlineata)基因组已由贝勒医学院作为i5k试点项目的一部分进行测序和注释。本数据集展示了由计算方法生成的德氏小瓜叶甲基因集BCM_v_0.5.3。在德氏小瓜叶甲基因组组装1.0的自动化注释中,除了RNA-Seq数据外,还使用了额外的蛋白质同源性数据。进一步的注释方法细节将在即将发表的论文中提供。注:此基因集为不稳定预发布版本(v0.5.3),并提供以便利在官方基因集发布前进行手动编辑和分析。此基因集的基因标识符可能不会得到维护。如需使用此数据集,请遵循贝勒医学院的数据使用条件:https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use。本数据集包含以下资源:
资源标题:德氏小瓜叶甲基因组注释v0.5.3(针对基因组组装v1.0)。文件名:Ldec_genome_annotations_BCM_version_0.5.3.tar.gz
资源描述:附带的tar.gz存档(Ldec_genome_annotations_BCM_version_0.5.3.tar.gz)包含以下文件:
LDEC.Analysis.gff3.gz:包含最终基因预测的gff3格式证据文件。
LDEC.CDS.fna.gz:德氏小瓜叶甲基因组注释v0.5.3的CDS序列。
LDEC.faa.gz:德氏小瓜叶甲基因组注释v0.5.3的氨基酸序列。
LDEC.fna.gz:德氏小瓜叶甲基因组注释v0.5.3的cDNA序列。
LDEC.Models.gff3.gz:德氏小瓜叶甲基因组注释v0.5.3的所有基因预测的gff3文件,经国家农业图书馆修改,以符合gff3规范。
提供机构:
Ag Data Commons



