Additional file 2 of Mosaic environment-driven evolution of the deep-sea mussel Gigantidas platifrons bacterial endosymbiont

Additional file 2: Supplementary Table 1. Information of Gigantidas platifrons samples used in metagenomic analysis and summary of sequencing data. Supplementary Table 2. Test datasets created from E. coli strain genomes. Supplementary Table 3. Summary of the assembled bins obtained by different binning methods using the E. coli test datasets. Supplementary Table 4. Summary of the genome features of the assembled strains. Supplementary Table 5. Functional enrichment analysis of core orthologs present more than 90 % strainsSupplementary Table 6. Functional enrichment analysis of clade specific orthologs. Supplementary Table 7 Number of environmental-related orthologs in each genome and their percentage in each clade. Supplementary Table 8. Summary of transposase in the core genes and clade-specific genes of the assembled genomes. Supplementary Table 9. Summary of plasmids assembled from PacBio sequencing libraries. Supplementary Table 10. COG and KEGG functional annotation of the non-redundant plasmid genes.