Compound I Formation and Reactivity in Dimeric Chlorite Dismutase: Impact of pH and the Dynamics of the Catalytic Arginine

Data type: spectroscopic measurements (UV-visible, ECD, EPR), enzyme activity measurements, mass spectrometry, spectroelectrochemistry and data analysis.

Files are in .DTA, .DSC, .xlsx, .m, .mat, .BSW, .csv, .txt, .dsx, .pdf, .uds formats

Information on origin of the data:

EPR spectroscopic measurements in DTA and DSC formats

EPR spectroscopic simulation and analyses in m and mat format

Analysis of Rapid Freeze-Quench calibration curve is in xlsx format

UV-vis spectroscopic measurements in csv, xlsx, txt, uds and dsx format

ECD measurements in csv, xlsx and dsx format

Enzyme activity data in csv and xlsx format

Mass spectrometry data in pdf and xlsx format

Spectroelectrochemistry data in BSW and xlsx format

The data are generated by:

UV−vis spectra were recorded using a Cary 60 UV–vis spectrophotometer (Agilent) and a U-3900 spectrophotometer (Hitachi, Mannheim, Germany).

Electronic circular dichroism spectroscopy was performed using Chirascan (Applied Photophysics, Leatherhead, UK).

Rapid Freeze-Quench of EPR sample was performed with the use of a device from BioLogic (Grenoble, France), consisting of an SFM-2000 stopped-flow unit and an MPS-70 controller unit, combined with a freeze-quench sample collector adapted for EPR tubes. The ejected volumes and flow rate were controlled by the BioLogic BIOKINE software, v. 4.72.

X-Band CW-EPR experiments were performed on X-band ELEXSYS E580 spectrometer (Bruker BioSpin GmbH) operating at a microwave frequency of ∼9.4 GHz and equipped with a standard TE102 cavity and a liquid He cryostat (Oxford Inc.)

Enzyme activity was measured polarographically following the release of O2 by using a Clark-type oxygen electrode (Oxygraph Plus; Hansatech Instruments, Norfolk, UK).

Stopped-flow spectroscopy measurements were performed with a SX-18MV or Pi-star from Applied Photophysics using either a diode array detector or a monochromator and photomultiplier detector.

Mass spectrometry analysis was performed with an ion-trap mass spectrometer (amaZon speed ETD, Bruker) equipped with the standard ESI source in positive ion, DDA mode (i.e., switching to MSMS mode for eluting peaks).

All spectroelectrochemistry experiments were conducted in a homemade OTTLE (optical transparent thin-layer spectroelectrochemical) cell. In detail, the three-electrode configuration consisted of a gold minigrid working electrode (Buckbee-Mears, Chicago, IL), a homemade Ag/AgCl/KClsat microreference electrode separated from the working solution by a Vycor set, and a platinum wire as the counter electrode. UV−vis spectra were recorded using a Varian Cary C50 spectrophotometer.

If the dataset includes multiple files that relate to each other:

Files in PARACAT_WP3_20230302_01_EPR folder includes EPR spectroscopic measurements and computer simulations/analyses, original data are in DTA/DSC formats; files in m format were used to process the data.

Files in PARACAT_WP3_20230302_02_UVVIS folder includes sequential and non-sequential stopped flow data, measured with detection by photodiode array or monochromator (time traces): original data is in dsx and csv format, xlsx format contains processed data; conventional photometric data is originally in txt and uds format, xlsx format contains processed data

Files in PARACAT_WP3_20230302_03_ECD folder contain ECD spectra: original data is in dsx and csv format, xlsx format contains processed data

Files in PARACAT_WP3_20230302_04_Enzyme activity folder contain polarographically detected changes in dioxygen concentration, due to enzyme activity: original data is in csv format, xlsx format contains processed data

Files in PARACAT_WP3_20230302_05_MassSpec folder contain mass spectrometry data for the MNP assay: original data is in pdf format, xlsx format contains processed data

Files in PARACAT_WP3_20230302_06_Spectroelectrochemistry folder includes spectroelectrochemistry measurements and computer analyses, original data are in BSW formats; files in xlsx format were used to process the data.

NB. See the “READ ME” text file in each subfolder for more detailed information on files organization.

Information on:

Abbreviations:

, chlorite dismutase; CCld, chlorite dismutase from Cyanothece sp. PCC7425; CcP, cytochrome c peroxidase; DaCld, chlorite dismutase from Dechloromonas aromatica; E°′, standard reduction potential; ECD, electronic circular dichroism; EPR, electron paramagnetic resonance; HRP, horseradish peroxidase; LPO, lactoperoxidase; MNP, 2-methyl-2-nitrosopropane; MPO, myeloperoxidase; PAA, peracetic acid; RFQ, rapid freeze-quench.

Units of measurement:

Concentration: mM (millimolar), µM (micromolar), nM (nanomolar), mg/mL (milligrams per milliliter)

Molecular mass: Da (Dalton)

Absorptivity: M-1 cm-1

Volume: mL (milliliters), µL (microliters), nL (nanoliters)

Wavelength: nm (nanometers)

Temperature: °C (Celsius degrees), K (Kelvin degrees)

Time: ms (milliseconds), s (seconds), min (minutes), h (hours),

Ellipticity: millidegrees

Frequency: GHz (gigahertz), kHz (kilohertz)

Power: mW (milliwatt)

Magnetic field: mT (milliTesla)

Reduction potential: mV (milliVolts)