ENCODE Fetal development

master_table_pcg_lnc.tsv: Metadata / information about each transcript isoform (filtered for protein coding and lncRNAs only) merged.gtf: GTF of transcript isoforms transcript_tpm_summary.tsv: TPMs of each transcript isoform fetal_dhs_info.tsv - genomic locations of all DHSs, distance from nearest TSS, gene associated with nearest TSSfetal_matrix_binary.tsv - binary matrix with samples (rows) x DHSs (columns) with 1 indicating the presence of a peak in that DHS in that sample at an FDR of 1%fetal_matrix_density.tsv - matrix of read depth normalized countsfetal_matrix_vst.tsv - matrix of vst normalized counts (like deseq)fetal_meta.tsv - metadata of fetal samples, should include the ln_number for DNase, which wil match the rows of the matricies, and the per sample matching ln_number and other identifiers for short read and long read RNA seq, as indicated by the column titles