AGP data for the project "Over-optimism in unsupervised microbiome analysis"
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Datasets from the American Gut Project (AGP) that were used by Ullmann et al. for the research project "Over-optimism in unsupervised microbiome analyis". The datasets were published by McDonald et al.: McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G,<br> et al. American gut: an open platform for citizen science microbiome research.<br> Msystems. 2018;3(3). DOI: https://doi.org/10.1128/mSystems.00031-18 We accessed the files otu_table__BODY_HABITAT_UBERON_feces_json.biom and metadata__BODY_HABITAT_UBERON_feces__.txt at ftp://ftp.microbio.me/AmericanGut/ag-2017-12-04. The phyloseq object ag.genus.rds results from these files after preprocessing. (For the preprocessing code, see our Github repository.)
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Zenodo创建时间：
2022-06-16
