OpenMM simulations of DMPC using the CHARMM Drude2023 force field in xtc format
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The dataset contains a PSF, a formatted coordinate file (CRD), and XTC files with the final 200 ns from<br> each of 3 replicate simulations from the paper <br> <strong>Drude Polarizable Lipid Force Field with Explicit Treatment of LongRange Dispersion:<br> Parametrization and Validation for Saturated and Monounsaturated Zwitterionic Lipids</strong><br> Yalun Yu, Richard M. Venable, Jonathan Thirman, Payal Chatterjee, Anmol Kumar, Richard W. Pastor,*<br> Benoît Roux,* Alexander D. MacKerell, Jr.,* and Jeffery B. Klauda*<br> https://doi.org/10.1021/acs.jctc.3c00203 XTC file names indicate the lipid and the replica number; each file has frames spaced at 10 ps over a 200 ns interval. The DCD sub-files in 10.5281/zenodo.7872767 have been concatenated into a single 200 ns long trajectory in xtc format by Batuhan Kav using MDAnalysis.



