Sequences of mitochondrial contigs for A. vaga individuals L1-L11

Sequences of mitochondrial contigs for <i>A. vaga </i>individuals L1-L11 extracted from whole-genome assemblies using the mitochondrial contig from the first published <i>A. vaga</i> genome assembly (Flot et al., 2013) as the query for blastn search. For L1, mitochondrial contigs were extracted from the MiSeq-based L1 diploid assembly (N50=22,073 bp). For individuals L2-L11, highly fragmented assemblies (with N50 in the range 1,600-3,400 bp) were generated with SPAdes (version 3.6.0) from HiSeq reads. Mitochondrial sequences for each individual, L1-L11, are in separate FASTA files.