Data for `Theory of Infectious Diseases with Testing and Testing-less Covid-19 Endemic' by B.Deng and C.Y. Yang

All mfiles starting with 'Run_*' can be run on Matlab without any pre-loaded variables or data. <br> The three files in the root directory consist of the only input data to all program mfiles for three of the four folders: Build_Real_Data, Build_Solution_Book, Plot_Output. Of which, SICM.m is the mathematical model, Input_Matched_InitialsAndParameters.mat contains initial conditions and parameter values for each day from day 50 to day 590, 30 best-fitted values for each day, ranking from the best to worst fit. The third csv file is the US cases and deaths data from CDC. <br> The order in which to generate the output data files is to run all Run_* mfiles in folders (1) Build_Real_Data (2) Build_Solution_Book (3) Plot_Output <br> To save memory space, Solution_Sheet.mat is not included in the shared data. It needs to be generated in Build_Solution_Book before plots in Plot_Output can be done. <br> When you reach the Plot_Output folder, you have build all data files to generate the fig_best_match, and the testing-free equilibrium E_1 and the interior endemic equilibrium E_* for the best-fitted model. <br> Files in folder 'Variant Typing' is independent and is for varients of Covid-19. Data file 'Publication_Data' contains parameters and ininitials for 5 variants from day 50 to day 590. 'Publication_Data_Classification' contains classification of the variants parameters into types according to Theorem 1.1 and Theorem 1.2 of the manuscript. For example, T113 is for the type defined by parameter condition 3 of Theorem 1.1, and T123 is for Theorem 1.2's parameter type 3. <br> All figures for the manuscript, 'Theory of Infectious Diseases with Testing and Testing-less Covid-19 Endemic' by B.Deng and CY. Yang are located in the root directory. <br> Note: It requires zero knowledge to verify the result. All one needs is the model SICM.m (or SICMRD.m) and the initial values and parameters provided in the root folder and in the `Variant Typing' folder. <br> Dr. B. Deng Univ. of Nebraska-Lincoln USA <br> All rights preserved. June 2023. <br>