Mouse Brain Atlas Ex Vivo MRI

The data set is part of the SAMBA pipeline, to be used for mousebrain atlas based segmentation and accompanies the following publication (https://pubmed.ncbi.nlm.nih.gov/30565026/): Anderson RJ, Cook JJ, Delpratt N, Nouls JC, Gu B, McNamara JO, Avants BB, Johnson GA, Badea A. Small Animal Multivariate Brain Analysis (SAMBA) - a High Throughput Pipeline with a Validation Framework. Neuroinformatics. 2019 Jul;17(3):451-472. doi: 10.1007/s12021-018-9410-0. PMID: 30565026; PMCID: PMC6584586. The creation of the reference atlas is summarily described in the publication: "An atlas based segmentation using a novel symmetrized atlas featuring 166 regions on each side, and having as initial point the parcellations described in (Calabrese et al. 2015b) provided label sets for 5 KA brains."