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资源简介：
Analysis of AMEs to find gene fusions also found in other types of breast cancer
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创建时间：
2018-08-18
相关数据集
Additional file 3 of CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data
Additional file 3. Additional tables. This file shows the results of false positive rate of different fusion detection methods based on the analysis of 80 cases that have both WGS and RNA-seq.
DataCite Commons2020-08-01 更新50
FET fusion oncoprotein-regulated genes in HT1080 cell line
Some specific sarcomas and leukemias are defined by characteristic FET (FUS, EWSR1, TAF15) fusion oncogenes. Myxoid liposarcoma and Ewing sarcoma are the most common entities characterized by FUS-DDIT
NIAID Data Ecosystem40
Expression profile of TRAMP-C1 cell line with PAX8-NFE2L2 overexpression. Mus musculus
We synthesized the PAX8-NFE2L2 fusion transcript and cloned it into a lentiviral vector, and used this to overexpress it in the murine prostate adenocarcinoma cell line TRAMP-C1. Overall design: We us
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Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types (RNA-seq)
We report the design and implementation of a "breakpoint analysis" pipeline to discover novel gene fusions by tell-tale transcript level or genomic DNA copy number transitions occurring within genes.
NIAID Data Ecosystem40
Additional file 5: of De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance
Cancer specific in-frame fusions where the 3′ partner gene is up regulated by >2X relative to the intact gene in normal tissue samples. Expression is the normalized RNA-Seq read counts as estimated
Figshare2017-08-30 更新40
