Additional file 1 of LightCUD: a program for diagnosing IBD based on human gut microbiome data

Additional file 1: Supplementary Table 1. Sample information. Supplementary Table 2. Assembly result evaluation of the training short reads. Supplementary Table 3. Test samples. Supplementary Table 4. Ratio of reads mapped to annotated contigs. Supplementary Table 5. Annotated strains from the training data. Supplementary Table 6. Annotated genera from the training data. Supplementary Table 7. Features/strains left after three-step feature selection. Supplementary Table 8. Forty-nine most important features/strains for the WGS-based module for health vs IBD. Supplementary Table 9. Twelve most important features/strains for the WGS-based module for UC vs CD. Supplementary Table 10. Taxonomic profile of test samples with LightCUD WGS-based health vs IBD module. Supplementary Table 11. Taxonomic profile of test samples with LightCUD WGS-based UC vs CD module.