Supplementary data Common chaffinch genome assembly

Supplementary data from Chromosome-level genome assembly of the common chaffinch (Aves:Fringilla coelebs): a valuable resource for evolutionary biology. We include the common chaffinch (Fringilla coelebs) genome assembly, as well as the supplementary methods, figures, tables and files described in the article. Supplementary Materials TableS1. Classification of repeats of the common chaffinch assembly. Figure S1. Screen for possible contamination using BlobTools. File S1. Methods: -Sequencing and genome assembly pipeline. -Assembly quality control. -Gene annotation and function prediction. -Non-coding RNA prediction and identification. File S2. Microsatellites: -Distribution of microsatellite motif lengths. -Microsatellite count and sequence length correlation. -Microsatellites and their genomic position. -Length distribution of microsatellites. -Frequency of occurrence of microsatellites on every scaffold. File S3. Genome annotation in general feature format. File S4. Information table about predicted genes with SwissProt, the Zebra finch genome, InterPro and GO terms. File S5. Predicted output of tRNA-SE scan. File S6. Sequence and structure of tRNAs. File S7. Predicted ncRNA types.