Additional file 4: of Using RNA-seq to characterize responses to 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide resistance in waterhemp (Amaranthus tuberculatus)

dentification of waterhemp (Amaranthus tuberculatus) transcripts significantly (FDR < 0.05, [43]) differentially expressed in response to mesotrione treatment. edgeR was used to identify differentially expressed transcripts (DETs) responding to herbicide treatment relative to mock-treated controls within each genotype (herbicide resistant (R) and susceptible(S)) and at specific time points (3, 6, 12, and 24 h after treatment (HAT). (XLSX 18 kb)