STAR-indexes of the pseudotranscriptomes for use in grandRescue
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This package contains the STAR-indexes for the pseudotranscriptomes (T->C conversion) of the human (ensembl v90) and mouse (ensembl v102) genomes for use with the grandRescue software (https://github.com/erhard-lab/grandRescue). These STAR-indexes were created using the grandRescue software (v1.0) and STAR (v2.7.10b) with the following parameters, where the reference files are the fasta- and gtf-files from the respective Ensembl versions of the human/mouse genome. <pre><code>gedi -e CreatePseudo -fasta reference.fa -gtf reference.gtf -from T -to C STAR --runMode genomeGenerate --runThreadN 24 --genomeDir STAR-index --genomeFastaFiles reference_pseudo_T2C.fasta --sjdbGTFfile reference_pseudo.gtf</code></pre>
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Zenodo创建时间：
2023-04-18
