Supplemental Tables.

Supplemental tables contents and descriptions (Tab 1). The breakdown of genes tested based on the original and shrunk dispersion estimates shown in Fig 3B (Tab 2). Imprinted and sex chromosome genes in male mouse brain organoid Bl6 x Spret hybrid (Tab 3). Results of the allelic imbalance and variance tests using single-cell counts from male Bl6xSpret hybrid (Tab 4 - CD8 Naïve T-cells, Tab 5 - CD8 T-cells day 7 post infection, Tab 6 - CD8 T-cells day 40 post infection). Perfromance comparison between ASPEN group-mean, scDALI-Het and Airpart DAI tests shown in Fig 4G and Supp. Fig 5C (Tab 7). Perfromance metrics for ASPEN group-var test shown in Fig 4H and Supp. Fig 5D (Tab 8). Results of the tests for the differential changes in the allelic ratio mean and variance using single-cell counts from female mouse brain organoid Bl6xCast hybrid (Tab 9). Results of the differential gene expression analyses between RGCs and IPCs in brain organoids using pseudo-bulked counts (Tab 10). Genes with monoallelic expression in female brain organoid Bl6 x Cast hybrid (Cortical neurons - Tab 11, IPCs – Tab 12, RGCs – Tab 13). Results of the tests for the differential changes in the allelic ratio mean and variance using single-cell counts from male Bl6 x Spret hybrid (Tab 14 – t-cells). Results of the allelic imbalance test using pseudobulked counts from male Bl6 x Spret hybrid (Tab 15 - CD8 Naïve T-cells, Tab 16 - CD8 T-cells day 7 post infection, Tab 17 - CD8 T-cells day 40 post infection). Results of the allelic imbalance test using pseudobulked counts from female Bl6 x Cast hybrid (Tab 18 – cortical neurons, Tab 19 – IPCs, Tab 20 – RGCs). (XLSX)