Spermophilus tridecemlineatus (Squirrel Nov. 2011 SpeTri2.0)

High confidence set 349 tRNAs decoding standard 20 AA 348 Selenocysteine tRNAs (TCA) 1 Notable atypical predictions Anticodon/isotype mismatch 58 Unexpected anticodons 4 Non-canonical anticodon loop length 1 Other tRNA-like predictions Primary filter (tRNAscan-SE pseudogenes) 146252 Secondary filter (low feature scores, possible rep. element) 19221 Tertiary filter (excessive isotype copies, possible rep. element) 85 Ala AGC 1 Arg TCT 4 Leu CAA 4 Ile TAT 4 Tyr GTA 9 Isotype tRNA Count by Anticodon Total Ala AGC 40 GGC CGC 6 TGC 18 64 Gly ACC GCC 10 CCC 2 TCC 4 16 Pro AGG 8 GGG CGG 2 TGG 7 17 Thr AGT 8 GGT CGT 4 TGT 5 17 Val AAC 5 GAC CAC 7 TAC 3 15 Isotype tRNA Count by Anticodon Total Ser AGA 9 GGA CGA 3 TGA 4 ACT GCT 7 23 Arg ACG 6 GCG CCG 3 TCG 5 CCT 5 TCT 5 24 Leu AAG 4 GAG CAG 4 TAG 2 CAA 4 TAA 3 17 Isotype tRNA Count by Anticodon Total Phe AAA GAA 8 8 Asn ATT GTT 7 7 Lys CTT 11 TTT 9 20 Asp ATC GTC 7 7 Glu CTC 4 TTC 4 8 His ATG GTG 6 6 Gln CTG 6 TTG 4 10 Isotype tRNA Count by Anticodon Total Ile AAT 10 GAT 4 CAT TAT 4 18 iMet/Met CAT 7/5 12 Tyr ATA GTA 9 9 Supres TCA CTA TTA 0 Cys ACA GCA 44 44 Trp CCA 6 6 SelCys TCA 1 1