Additional file 1 of Comparison of genomic prediction accuracies in dairy cattle lactation traits using five classes of functional variants versus generic SNP

Additional file 1: Table S1. Comparison of Genomic Prediction Accuracies in Dairy Cattle Lactation Traits Using Five Classes of Functional Variants Versus Generic SNP. This table compares genomic prediction accuracies across different functional SNP types, including GWAS, eeQTL, seQTL, ieQTL, aseQTL, coding variants, histone-related variants (ChIP-seq, ATAC-seq, asbQTL), and combinations of SNP types (eeQTL + GWAS, eeQTL + GWAS + asbQTL, eeQTL + GWAS + asbQTL + aseQTL, AllSNP) versus generic SNP (randomly sampled SNPs from the current SNP chip, equivalent to functional variant types).