Most existing measures of distance between phylogenetic trees are based on the geometry or topology of the trees. Instead, we consider distance measures which are based on the underlying probability d
This repository contains the inferred ML gene tree files and MSA profiles of different concatenated MSAs, trimmed, untrimmed, or Dayhoff recoded, with different outgroup compositions, using the single
(A) Metabolic pathways identified in at least 5 fecal samples of wild type (WT) and/or human-microbiota-associated (HMA) mice by HUMAnN3. (B) Metabolic pathways identified only in WT samples, stratifi
