Genome assemblies of Xanthomonas oryzae pv. oryzae (PXO35, FXO38, Huang604) and Xanthomonas oryzae pv. oryzicola (BAI35, MAI23)

Genome assemblies of <em>Xanthomonas oryzae</em> pv. <em>oryzae</em> (<em>Xoo</em>) and <em>Xanthomonas oryzae</em> pv. <em>oryzicola</em> (<em>Xoc</em>). Genome assemblies of the <em>Xoo</em> strains PXO35, FXO38, Huang604 and the <em>Xoc</em> strains BAI35, MAI23, have been generated with Flye based on ONT reads. For each of these strains, we corrected the sequences encoding for transcription activator-like effectors (TALEs) with our TALE-correction pipeline (https://github.com/Jstacs/Jstacs/tree/master/projects/talecorrect). For Xoo PXO35, we additionally provide assemblies based on reads obtained from different sequencing methods (Illumina, PacBio, ONT) generated by a collection of (hybrid) assembly strategies and different polishing approaches applied to combinations of these.