Tables and Data for SpliZ Manuscript

Tables and data corresponding to the manuscript "The SpliZ generalizes “Percent Spliced In” to reveal regulated splicing at single-cell resolution" (https://www.biorxiv.org/content/10.1101/2020.11.10.377572v2.full.pdf)<br>spliz_scores.xlsx: Separate tables with the SpliZ and SpliZVD score for each cell and gene for both individuals 1 and 2 and both 10x and Smart-seq2 technologies. The cell, gene, cell type, SpliZ, and SpliZVD are given by the "cell", "geneR1A", "ontology", "scZ", and "svd_z0" columns, respectively. A: individual 1 10x; B: individual 2 10x; C: individual 1 Smart-seq2; D: individual 2 Smart-seq2.<br><br>leafcutter_calls.xlsx: To call significant splicing events for Leafcutter, the “p” column was required to be &lt; 10e-10 and the “max\_logef” value was required to be &gt; 1.5. The “called” column is True if the splicing event was called by Leafcutter using these cutoffs and False otherwise. For the SpliZ, genes were called as differentially alternatively spliced if perm_pval_adj_scZ &lt; 0.05. A: Leafcutter results for individual 1. B: Leafcutter results for individual 2. C: Leafcutter results for channel P3_2_S10 from individual 2. D: SpliZ results for channel P3_2_S10 from individual 2.<br>The HLCA*.pq files are the input data for the pipeline (both individuals, 10x and Smart-seq2 data) required to reproduce these results.<br>