Additional file 2 of Systematic immune cell dysregulation and molecular subtypes revealed by single-cell RNA-seq of subjects with type 1 diabetes

Additional file 2: Table S1. Clinical information of samples used for scRNA-seq. Table S2. Clinical information of samples used for FACS symphony. Table S3. Cell type-specific T1D DEGs. Table S4. Gene Ontology (GO) over-representaion results of T1D DEGs modules. Table S5. GSEA results of T1D DEGs across 13 immune cell types. Table S6. Filtered GSEA results (cell type-specific and top three GO terms in each cell types). Table S7. GO over-representaion results of T1D and SLE overlaping PBMC DEGs. Table S8. GO over-representaion results of overlaping T1D up-DEGs with prognostic expression signatures and transcriptome changes in T1D pancreas. Table S9. Cell type-specific T1D DARs. Table S10. List of antibodies used in this study.