Parametric Analysis Results - Bioluminescent Bacteria Self-Organization Patterns in Cylindrical Geometry (1D, 2D, 2.5D, 3D Models)

Numerical simulation results from parametric analysis of bioluminescent bacteria self-organization patterns. Generated as part of the master's thesis "Computational Modeling of Luminous Bacteria Self-Organization". Models included: 1D periodic domain 2D polar (top disk, polar coordinates) 2D cylindrical (side surface, unwrapped cylinder) 2.5D combined (coupled polar + cylindrical) 3D full cylindrical volume (ρ×φ×z) Experiments (parametric sweep): Experiment Parameter varied Value baseline -- D_U=0.1, CHI=8.3, α=1.0, β=0.73, γ=0.025, W₀=1.0 high_chemotaxis CHI 8.8 low_chemotaxis CHI 7.8 low_D_U D_U 0.085 high_D_U D_U 0.115 low_D_W D_W 0.15 high_D_W D_W 0.3 low_alpha α 0.8 high_alpha α 1.2 low_beta β 0.60 high_beta β 0.80 low_gamma γ 0.015 high_gamma γ 0.040 low_W0 W₀ 0.75 high_W0 W₀ 2.0 Each experiment contains: results/ - time-snapshot .dat files (load into visualizer for 2-D/3-D exploration) spatiotemporal/ - spatiotemporal diagram .dat files (angular position vs time at outer edge) metadata/ - JSON configuration and run summaries, execution logs Geometry: cylinder, R=5.0, H=10.0, grid 40×224×80 (ρ×φ×z) Time: T=400.0, dt=0.00005, snapshots saved every 1.0 time unit Numerical method: finite difference (OpenMP parallelization for 2-D cylindrical and 3-D) File format: plain-text .dat with # KEY = VALUE header - open directly with the companion visualizer