Additional file 13: of Identification of candidate genes involved in Witches’ broom disease resistance in a segregating mapping population of Theobroma cacao L. in Brazil

Genes identified in all of the QTL regions associated with witches’ broom disease resistance. The annotation of the genes was based on the Matina 1–6 v1.1. genome. The genes indicated in red are genes that are most likely involved in disease resistance. Genes indicated in yellow contain a SNP marker that had the highest association with the disease in each QTL. Genes indicated in orange were identified as differentially expressed by Teixeira et al. [77]. The homologues in Arabidopsis thaliana (if known) were used, together with the GO Slim terms to identify the cellular components, the molecular components and the biological functions of the genes within the QTL regions. (XLS 155 kb)