Additional file 2 of Transcriptome analysis reveals the potential mechanism of altering viability, yield, and isoquinoline alkaloids in Coptis chinensis through Cunninghamia lanceolata understory cultivation

Additional file 2: Table S1. Primer pairs used for qRT–PCR analysis. Table S2. Overview of the RNA-Seq data. Table S3. DEGs identified in the phenylpropanoid biosynthesis pathway. Table S4. DEGs identified in the zeatin biosynthesis pathway. Table S5. DEGs identified in the photosynthesis pathway. Table S6. DEGs identified in the tyrosine metabolism and isoquinoline alkaloid biosynthesis pathways. Table S7. DEGs identified in the starch and sucrose metabolism pathway. Table S8. Pearson’s correlations between DEGs and yield indicators. Table S9. Pearson’s correlations between DEGs and isoquinoline alkaloid contents. Table S10. Genes selected for qRT–PCR validation. Table S11. RNA-Seq and qRT–PCR data used for linear regression.