Results of single-marker (GenABEL) and Bayesian (GenSel) genome-wide association analysis for susceptibility to MAP infection in Jersey cattle (combined data, N = 1,069)1.

1Only the twenty most significant SNPs are shown.2SNPs identified commonly by both GenABEL and GenSel analyses; order is based on P-values from GenABEL.3SNPs identified only by GenABEL.4SNPs identified only by GenSel.5Bos Taurus chromosomes.6Position of SNP based on Bovine genome build UMD 3.1 (in base pair).7Major allele.8Minor allele.9Estimated effect of allele B (fitted allele) and the standard error of the estimated effect in the parenthesis.10P-value corrected by genomic control approach (GC).11Frequency of B allele in cases.12Frequency of B allele in controls.13Rank based on percentage of genetic variance among the twenty most significant windows by GenSel analysis.14Number of 1-Mb non-overlapping genome window and number of SNPs within each window in the parenthesis.15Percentage of total genetic variance explained by 1-Mb windows.16Proportion of models in which the corresponding window accounted for > 0.04% of genetic variance (expected variance if each window had the same effect: 1/total number of windows = 2,657).17Proportion of MCMC iterations that included the corresponding SNP.