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Supplemental Material for Wang et al., 2020

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Table S1 Illumina sequencing reads used for genome size estimation and the correction of the genome assembly;Table S2 Size distributions of the PacBio subreads;Table S3 Statistical details of the PacBio subreads;Table S4 The initial C. mollissima assembly, as generated by different tools;Table S5 Statistical details of the Hi-C library data;Table S6 Details of the alignment of the clean Hi-C data to the initial assembly;Table S7 Statistical details of all types of Hi-C sequencing pairs;Table S8 Evaluation using BUSCO;Table S9 Alignment of the Illumina reads to the C. mollissima genome assembly;Table S10 Functional annotation of the predicted protein-coding genes;Table S11 Castanea mollissima gene prediction;Table S12 Statistical details of the identified genes;Table S13 Statistical details of the identified repeat sequences;Fig S1. Distribution of subread lengths;Figure S2 Nineteen-k-mer estimation of genome size;Fig S3 Differences in the genes predicted by the Ab initio, homolog, and RNA-sequencing methods;<br>
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GSA Journals
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2020-08-26
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