Additional file 2 of Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California
Estimated times of the most recent common ancestors (tMRCAs) of the main clades and credibility intervals (95%HPD), with calendar years, most probable locations, and state posterior probabilities (spp
Listeria monocytogenes is the causative agent of listeriosis, a potentially fatal infection in both humans and animals. Although the disease usually occurs sporadically, outbreaks are occasionally rep
This study aims to describe the molecular epidemiology of antibiotic-resistant bacteria in soil fertilized by poultry manure, specifically their clonality, putative resistance, and virulence genes and
We used WGS analysis to investigate the population structure of 877 Streptococcus pneumoniae isolates from five carriage studies from 2002 (N=346), 2010 (N=127), 2013 (N=153), 2016 (N=187) and 2018 (N
