Additional file 2 of LCM and RNA-seq analyses revealed roles of cell cycle and translational regulation and homoeolog expression bias in cotton fiber cell initiation

Additional file 2: Supplemental Table 1. RNA-seq statistics of LCM samples. Supplemental Table 2. Upregulated and down-regulated genes in fiber cell initials at 0 DPA. Supplemental Table 3. Upregulated and down-regulated genes in early fiber cells at 2 DPA. Supplemental Table 3a. Up-regulated and down-regulated genes in epidermal cells in 0 and 2 DPA. Supplemental Table 4. Upregulated genes in early fiber cells (0 and 2 DPA) specific to species. Supplemental Table 4a. Upregulated and down-regulated genes in fiber cells between GhTM-1 and Gb3–79 at 2 DPA. Supplemental Table 4b. Significant GO terms in upregulated and down-regulated genes between GhTM-1 and Gb3–79 in fiber cells at 2 DPA. Supplemental Table 5. List of A and D homoeologs with biased expression values. Supplemental Table 5a. Orthologs of G. hirstum and G. barbadense. Supplemental Table 6. List of putative ribosomal protein subunit and cell cycle genes with expression values in LCM samples. Supplemental Table 7. Expression values of putative TOR, RAPTOR, LST8, and EPB1 genes in LCM samples. Supplemental Table 8. Expression values of phytohormone and MYB transcription factor related genes in LCM samples.