Additional file 4: Table S4. of Whole-genome transcription and DNA methylation analysis of peripheral blood mononuclear cells identified aberrant gene regulation pathways in systemic lupus erythematosus

Hypomethylated CpG sites in PBMC of SLE patients comparing normal controls by genome-wide DNA methylation analysis. Three group comparisons, SLE LN+ vs. NC (S4-1), SLE LN− vs. NC (S4-2), and SLE (LN− and LN+) vs. NC (S4-3), were performed to identify hypomethylated CpG sites by fold change (FC) > 1.2 and q value < 5% within each comparison. The 3785 common hypomethylated sites identified in each of the three group comparisons were then selected and listed in S4-4. (XLSX 1843 kb)