Additional file 2 of Exposure to hypoxia causes stress erythropoiesis and downregulates immune response genes in spleen of mice

Additional file 2: Additional Table 1. Specific primers of genes for qRT-PCR. Additional Table 2. Summary of QC for the time-series RNA-seq. Additional Table 3. Differentially expressed genes between D1 and D0. Additional Table 4. Differentially expressed genes between D3 and D0. Additional Table 5. Differentially expressed genes between D5 and D0. Additional Table 6. Differentially expressed genes between D7 and D0. Additional Table 7. Differentially expressed genes between D13 and D0. Additional Table 8. Results of KEGG pathway enrichment analysis for DEGs between D1 and D0. Additional Table 9. Results of KEGG pathway enrichment analysis for DEGs between D3 and D0. Additional Table 10. Results of KEGG pathway enrichment analysis for DEGs between D5 and D0. Additional Table 11. Results of KEGG pathway enrichment analysis for DEGs between D7 and D0. Additional Table 12. Results of KEGG pathway enrichment analysis for DEGs between D13 and D0. Additional Table 13. The clusters of intersection DEGs (739 genes) in Fig. 2b by Muffz analysis. (related to Fig. 2c). Additional Table 14. GO enrichment analysis results of 739 genes. (Red for unregulated genes, blue for downregulated genes). Additional Table 15. Edge information of key module regulating the stress erythropoiesis. (related to Fig. 3c). Additional Table 16. GO enrichment analysis for intersection of turquoise module and 739 DEGs. (related to Fig. 3b). Additional Table 17. The clusters of genes in yellow module by Muffz analysis. (related to Fig. 5c). Additional Table 18. Results of GSEA for DEGs between D3 and D0. (related to Fig. 5e). Additional Table 19. The results of CIBERSORT analysis to estimate the relative fraction of cells during terminal erythropoiesis stage. (related to Fig. 4d). Additional Table 20. The results of CIBERSORT analysis to estimate the relative fraction of immune cells. (related to Fig. 5f and Figure S4a). Additional Table 21. The correlation between genes with Hif1a (Absolute value of the correlation coefficient > 0.9). (related to Figure S5). Additional Table 22. The weight of erythrocyte differentiation related genes in turquoise module. (related to Figure S5). Additional Table 23. Scanning for occurrences of Arnt motif in promotor region of 5 genes.