Ty3/gypsy LTRr-gene associations in known protein coding genes in the PEST strain genome.

We identified 17 known protein genes associated with Ty3/gypsy insertions. Column 1 gives the coordinates in the Agam P3 assembly of each insertion associated with a gene; column 2 their divergence (%) from the consensus (n. d. means “not determined”); column 3 the condition category of each insertion; and column 4 the proximity to a gene in base pairs (a proximity of 0 bp means that the insertion is located within a gene). Column 5 shows the name of the gene involved in the association. Column 6 indicates the region of the gene affected: (i) exon or intron, if the insertion is located within the transcription boundaries; and (ii) 5′ and 3′, if the insertion is located downstream and upstream, respectively. Column 7 shows the putative function of the gene involved in the association.