<i>Linum tenue </i>- PI estimates per population
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https://figshare.scilifelab.se/articles/dataset/_i_Linum_tenue_i_-_PI_estimates_per_population/26937271/1
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资源简介:
Whole genome pi estimates for individuals of all population of <i>L. tenue</i> per 100 kb windows.It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087Estimations were done using vcftools v.0.1.16 on a filtered vcf file.File's descriptions:CHROM = the chromosome's nameSTART = the start position of the 100 kb windowEND = the end position of the 100 kb windowPI = the estimated value of pi for that windowList of the populations:population 06population 08population 17population 21population 23population 26population 32population 34
细叶亚麻(*L. tenue*)所有种群个体的全基因组核苷酸多样性(π)估计值,以每100 kb窗口为统计单元。
本数据集隶属于以下研究论文:Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S. 等及 Slotte, T. (2024). 《三花亚麻(Linum trigynum)二型花柱衰退的遗传成因与基因组演化效应》,《分子生物学与进化》,msae087. https://doi.org/10.1093/molbev/msae087
该估计值通过vcftools v.0.1.16对经过过滤的VCF(变异调用格式,Variant Call Format)文件计算得到。
文件字段说明如下:
CHROM:染色体名称
START:100 kb窗口的起始位置
END:100 kb窗口的终止位置
π:对应窗口的核苷酸多样性估计值
本数据集涉及的种群如下:
种群06
种群08
种群17
种群21
种群23
种群26
种群32
种群34
提供机构:
Stockholm University创建时间:
2024-09-05
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