Gene expression counts from amniotic fluid cells

<strong>File description:</strong> Gene-level counts using the gtf file from the release 29 of GENCODE https://www.gencodegenes.org/human/release_29 Split counts spanning from one exon to another using an annotation-free algorithm, therefore capturing new splice sites Non-split counts covering exon-intron boundaries Sample annotation describing each sample from the dataset Description file with global information from the dataset <strong>Use: </strong>The count matrices are intended to help researchers that are interested in using RNA-Seq data with the purpose of diagnostics. Researchers can merge their own dataset with the downloaded ones, provided the tissue, genome build, strand, and paired end specifications match. Afterwards, the DROP pipeline can be used to compute expression and splicing outliers (https://github.com/gagneurlab/drop). <strong>Maintainer: </strong>Vicente A. Yépez, [e-mail] <strong>Title:</strong> Gene expression and splicing counts from amniotic fluid cells<br> <strong>Number of samples:</strong> 56<br> <strong>Tissue:</strong> Amniotic fluid cells<br> <strong>Organism:</strong> Homo sapiens<br> <strong>Genome assembly:</strong> hg19<br> <strong>Gene annotation:</strong> gencode29<br> <strong>Disease ICD-10</strong>: Q89: F2100984A and F2100985, Q23: F1901567 and Q74: F2000845<br> <strong>Strand specific</strong>: False<br> <strong>Paired end</strong>: True<br> <strong>Cite as</strong>: Cite both the resource using Zenodo's citation and the publication under References<br> <strong>Dataset contact</strong>: Brian Chung [e-mail]<br> <strong>Comments</strong>: A total of 56 RNA-seq samples were used for running pipeline. Out of those, 52 samples were included in the manuscript.