Acrocephalus familiaris kingi genome assemblies and annotation

De novo genome assemblies of the Nihoa millerbird (<i>Acrocephalus familiaris kingi</i>). The genome was assembled using Supernova 2.0.0 (Weisenfeld et al. 2017). Both pseudohaplotypes were output (files <b>AcrFamPseudohap2.1.fasta.gz</b> and <b>AcrFamPseudohap2.2.fasta.gz</b>). The assembled genome was annotated (file <b>AcrFam_augustus.gff.gz</b>) using AUGUSTUS 3.3 (Stanke et al. 2006, 2008) using cDNA hints derived from the zebra finch (<i>Taeniopygia guttata) </i>assembly TaeGut.3.2.4 (Warren et al. 2010) and gene model training from BUSCO 3.0.2 (Simão et al. 2015). Supernova scaffolds were assembled into pseudochromosomes using the Chromosemble function of Satsuma 3.1.0 (Grabherr et al. 2010). Pseudochromosomes are sorted into autosomes (file <b>AcrFam_pseudochr_autosomes.fasta.gz</b>), Z chromosome (file <b>AcrFam_pseudochr_Z.fasta.gz</b>), and mitogenome assemblies (file <b>AcrFam_pseudochr_MT.fasta.gz</b>). For further detail, see Kearns et al. Accepted. Conservation genomics and systematics of a near-extinct island radiation. <i>Molecular Ecology</i>.