Niche expansion of capuchin monkeys to forest floor on guild-reduced islands increases interspecific spatio-temporal overlap

# Niche expansion of capuchin monkeys to forest floor on guild-reduced islands increases interspecific spatio-temporal overlap [https://doi.org/10.5061/dryad.2fqz612xb](https://doi.org/10.5061/dryad.2fqz612xb) ## Description of the data and file structure This dataset includes raw data, processed data, and scripts for "Niche expansion of capuchin monkeys to forest floor on guild-reduced islands increases interspecific spatio-temporal overlap". The folder contains the following data files: 1. Supp.DATA_CoibaBioblitz.csv 1. Raw data from Survey 1. 2. Supp.DATA_capuchin_terrestriality.csv 1. Raw data from Survey 2. 3. Supp.DATA_tool_users.csv 1. Raw data from Survey 3. 4. Processed_Data.csv 1. Processed data used for the analyses. All data files contain the following columns: 1. scientificName: The scientific name of the species. *Cebus capucinus* for white-faced capuchin monkey and *Dasyprocta punctata* for Central American agouti. 2. locationName: The camera trap station where the detection event was recorded. 3. DateTime: Date and time of the detection event. 4. dep_start: Start date and time of the camera trap deployment. 5. dep_end: End date and time of the camera trap deployment. 6. cam_loc: Whether the camera trap was on the canopy of the tree (canopy) or at knee-height (ground). 7. sites: Whether the camera trap was located on an island site (Island) or at Barro Colorado (Mainland). 8. suntime: Solar time of the detection event. 9. dep_length_hours: Camera trap deployment duration in hours. This is the difference between columns dep_end and dep_start. Additionally the following columns are present on the Processed_Data.csv file: 1. tool_site: Whether the camera trap was located in the tool-use area (1) or not (0). 2. tool_use: Whether the detection event involved a monkey using tools (1) or not (0). **Note:** The raw data from Survey 3 (Supp.DATA_tool_users.csv) was originally coded using a 30-second temporal filter, rather than the 2-minute filter used in Survey 1(Supp.DATA_CoibaBioblitz.csv) and Survey 2 (Supp.DATA_capuchin_terrestriality.csv). Thus, raw data from Survey 3 must be recoded using a 2-minute filter, prior to running analyses. This is done on S1-Script-Data-Prep (see below). ## Code/Software The data contains the following script files for replicating analyses: 1. S1-Script-Data-Prep.R 1. This script is optional. It is for preparing the data prior to running the analyses. The outcome of this script is the object Processed_Data.csv. Additionally, this script also reproduces the camera trap operation plots of the Supplementary Information. 2. S2-Script-Temporal-Overlap.R 1. This script reproduces the analyses of activity patterns and temporal overlap. 3. S3-Script-GLMM.R 1. This script reproduces the analyses of detection rates. 4. S4-Script-Survival-Analysis.R 1. This script reproduces the waiting time analysis. Use S1-Script-Data-Prep for replicating data preparation and for the camera operation plots on Supplementary Information. For replicating the analyses directly, use file "Processed_Data.csv" and start on S2-Script-Temporal Overlap.